Add richer ant documentation
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docs/ALARM-AND-DEFENSE.md
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# alarm pheromones, threat response, and defense
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how ants detect threats, communicate danger, and defend the colony. relevant to
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features #2 (repellent pheromone) and #6 (alarm pheromone) in REALISM-IDEAS.md.
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## what triggers alarm pheromone release
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main triggers — all physical/biological, not environmental chemicals:
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- physical disturbance of the nest or individual ant
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- predator detection (olfactory, visual, or tactile)
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- crushing or injury of nestmates (damaged ants release alarm compounds
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from ruptured glands)
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- intrusion by non-nestmates into the colony
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ants exhibit "enemy specification" — dangerous species are more effective at
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evoking alarm than less threatening ones. this is not a generic startle reflex.
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### specific predator triggers
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- army ants (Neivamyrmex spp.): minor workers of Pheidole desertorum and
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P. hyatti initiate panic alarm leading to nest evacuation specifically when
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they detect approaching army ants. distinct from response to other threats.
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- the spider Habronestes bradleyi exploits Iridomyrmex purpureus alarm
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pheromone (6-methyl-5-hepten-2-one) as a kairomone — the predator is
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literally attracted by the alarm signal, turning the defense against the ants.
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### what about plants, chemicals, environmental hazards?
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no strong evidence for specific plants triggering alarm pheromone release.
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some alarm compounds (citronellal) exist in plant essential oils, so
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cross-reactivity is plausible but undocumented.
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some alarm compounds (citral, 2-heptanone, 4-methyl-3-heptanone) have
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antifungal properties. the alarm system may have originally evolved for
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pathogen defense, with the danger-signaling function coming later.
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### environmental threat responses
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- flooding: Solenopsis invicta detects rising water and responds with
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colony-wide raft formation — workers link legs to create buoyant living
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rafts, brood placed on top. instinctive, coordinated.
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- chemical contamination: cadmium exposure degrades olfactory sensitivity in
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fire ants, reducing bait search efficiency. at higher doses, reverses
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attraction to food odorants entirely. ants detect contamination through
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impaired function more than active avoidance.
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- fire: no specific "fire alarm" behavior. fire substantially changes ant
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communities, recovery takes years. treated as a disturbance ecology question,
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not real-time detection.
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## alarm is graduated, not binary
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graduated in at least three ways:
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### concentration-dependent intensity
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in Pogonomyrmex badius (harvester ant):
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low intensity:
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- increased locomotion
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- antennae/head waving
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- looping movements
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- periodic gaster-lowering to substrate
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high intensity:
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- faster locomotion
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- tighter circling
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- mandible opening (gaping)
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- reduced antennae waving (attention shifts from sensing to combat readiness)
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### multi-component chemical modulation
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in Oecophylla longinoda (weaver ant):
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- major components (1-hexanol, hexanal) trigger alert and attraction
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- minor, less volatile components act as markers for attack
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- creates a staged escalation: volatiles spread first (alert), heavier
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compounds arrive later (attack cue)
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- hexanal is the most volatile — spreads fastest, causes head-raising and
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jaw-opening
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- hexanol is less volatile, recruits nestmates to the source
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most alarm compounds fall in the C6-C10 molecular weight range, selected for
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high volatility and rapid fade-out.
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### context-dependent response (distance from nest)
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- near the nest: alarm pheromone triggers defensive/aggressive behavior
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(attack the threat)
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- far from the nest (foraging area): same pheromone triggers flight/dispersal
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(flee from the threat)
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same chemical, different interpretation based on spatial location.
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## alarm cascading and propagation
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### positive feedback mechanics
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alarmed ants produce alarm pheromone, which recruits and alarms additional
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ants, who produce more pheromone. structurally similar to trail pheromone
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reinforcement.
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in territory-conflict models, peaceful ants encountering alarm pheromone
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transition to aggressive state, producing their own alarm pheromone — classic
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autocatalytic cascade.
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### spread speed
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determined by component volatility. volatile components (hexanal) expand the
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active space rapidly; heavier components diffuse more slowly.
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Wilson & Bossert (1963) established the theoretical framework: the "active
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space" (zone where concentration >= detection threshold) expands rapidly then
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contracts as the compound evaporates. for typical alarm compounds, the signal
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dies out within a few minutes unless reinforced.
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number of alarmed nodes decays linearly with network distance from the source.
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### built-in dampening (alarm does NOT spiral out of control)
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- volatility is the primary brake: alarm compounds are specifically selected
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for rapid evaporation (low molecular weight, C6-C10). the signal
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self-extinguishes.
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- no reinforcement = fade-out: if the threat is removed, no new pheromone is
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deposited, and the existing signal evaporates within minutes.
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- linear decay with distance: the cascade weakens with each hop through the
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network rather than amplifying.
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the system is designed for fast on, fast off — the opposite of trail pheromone
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which is selected for persistence.
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## defensive strategies by species
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### flee
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- Pheidole desertorum, P. hyatti: detect army ant (Neivamyrmex) approach,
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evacuate nest with brood. panic alarm.
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### multi-phase defense
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- Pheidole obtusospinosa: super majors block nest entrance with enlarged heads
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(phragmosis), then switch to aggressive combat outside.
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### autothysis (self-explosion)
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- Colobopsis explodens and ~15 Colobopsis spp.: minor workers rupture their
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bodies, releasing bright yellow, sticky, toxic secretion. used as an INITIAL
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resort, not a last resort.
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### chemical spray
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- Formica rufa and other Formicinae: spray formic acid from acidopore (tip of
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gaster). bite wound first, then spray acid into the wound. effective against
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arthropods and even wood-boring beetles.
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### trap-jaw strike
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- Odontomachus bauri: mandibles close at 35-64 m/s — one of the fastest
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movements in the animal kingdom. strike against substrate launches the ant
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into the air for escape. strike against intruder for ejection.
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### entrance blockade (phragmosis)
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- Colobopsis majors, P. obtusospinosa super majors: use enlarged heads as
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physical plugs at nest entrances.
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### caste-based defensive labor
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- P. obtusospinosa: super majors specialize in entrance-blocking (passive)
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and combat (active). minors handle brood evacuation. regular majors do both.
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- Colobopsis: minor workers are the suicide bombers (autothysis). major
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workers are the entrance blockers.
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## alarm interaction with other pheromones
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### alarm + trail pheromone
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alarm does NOT simply suppress trail-following. it can redirect it:
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- ants may follow trails toward a threat for defense
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- or away from a threat for evacuation
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- context (distance from nest, threat intensity) determines which program wins
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alarm and trail pheromones operate on different chemical channels (different
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compounds, different glands — mandibular for alarm vs Dufour's/poison for
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trail in many species). an ant can potentially process both simultaneously.
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### foraging disruption
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alarmed ants leave their nest pile and stop normal foraging. but given alarm
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pheromone volatility (fades in minutes), foraging disruption is inherently
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short-lived for localized threats.
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recovery time: not well-quantified, but the volatility constraint means the
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chemical signal clears within minutes. behavioral recovery follows shortly
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after. the system is tuned for rapid return to baseline.
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## simulation relevance
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for the alarm pheromone channel (feature #6):
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key parameters:
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- separate channel from trail pheromone (world.A is available, or a second
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world texture per INFRASTRUCTURE.md)
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- high diffusion rate, fast decay (minutes, not hours)
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- response is context-dependent: fight near nest, flee far from nest
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- graduated intensity via concentration thresholds, not just on/off
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- positive feedback with built-in decay (volatile = self-extinguishing)
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- caste-specific responses if caste system is implemented
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the multi-component timing (fast alert component + slow attack component) could
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be modeled as:
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- option A: two sub-channels with different diffusion rates
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- option B: single channel with behavioral thresholds (low = alert, high =
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attack)
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- option B is simpler and captures the essential dynamics
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for the repellent pheromone (feature #2, already has infrastructure):
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- deposited at trail junctions to depleted food, not along entire failed paths
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- ants encountering it U-turn or zigzag
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- longer half-life than trail pheromone (~2x)
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- junction detection is the hard part — requires knowing when an ant is at
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a bifurcation point vs mid-trail
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## sources
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Alarm Communication
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AntWiki antwiki.org/wiki/Alarm_Communication
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Alarm pheromone processing in the ant brain
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PMC2912167
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Alarm pheromone composition in fungus-growing ants
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PMC5371636
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Alarm pheromone and alarm response of clonal raider ant
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PMC9941220
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Insect alarm pheromones in response to predators
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Basu 2021 (WSU)
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Alarm Pheromone — ScienceDirect Topics
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Multi-phase defense by Pheidole obtusospinosa
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PMC3014660
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Colobopsis explodens
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Wikipedia
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Formica rufa
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Wikipedia
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Trap-jaw ant mandible mechanism
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J Exp Biol 226(10) jeb245396
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Ant territory formation model with alarm pheromones
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ScienceDirect S0025556425001245
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Fire ant flood raft behavior
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AMDRO
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Cadmium olfactory neurotoxicity in fire ants
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ScienceDirect S0269749124016592
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Wilson & Bossert 1963
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Theoretical framework for pheromone active space dynamics
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The Ants Chapter 7 — AntWiki
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docs/FOOD-QUALITY.md
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docs/FOOD-QUALITY.md
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# food quality perception and evaluation in ants
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reference doc for food quality mechanics in the simulation. all claims sourced
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from published research. confidence levels noted where information is
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extrapolated or less well-established.
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## 1. sensory detection: what ants can taste
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### sensory organs
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ants detect food using gustatory (taste) sensilla distributed across multiple
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body parts. the primary taste organs are:
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- **foreleg tarsi** — contact chemoreceptors. in fire ants (Solenopsis invicta),
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the foreleg tarsi play a MORE important role in sucrose detection than the
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antennal flagellum. sensilla chaetica, trichoid II, and basiconica I/II all
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have a clear pore at their tip for chemoreception.
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- **antennal flagellum** — both olfactory and gustatory sensilla. used for
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close-range assessment and during trophallaxis.
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- **maxillary and labial palps** — mouthpart sensilla for evaluation during
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ingestion.
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- **pharynx** — internal gustatory sensilla that evaluate food as it enters the
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crop.
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**confidence: high** — well-established insect morphology, confirmed across
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multiple ant species.
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### gustatory receptor (GR) genes
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the number of GR genes varies by species and correlates with dietary breadth:
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| species | common name | GR genes |
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|--------------------------|---------------------|----------|
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| Linepithema humile | Argentine ant | 96 |
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| Apis mellifera | honeybee | 10 |
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| Drosophila melanogaster | fruit fly | 68 |
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ant GR genes fall into four clades: CO2 receptors, GR43a-like (internal
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fructose/nutrient sensors), sugar receptors, and bitter receptors. generalist
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species tend to have expanded bitter receptor families, presumably broadening
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the range of plant secondary metabolites they can detect.
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**confidence: high** — genomic data from sequenced ant genomes.
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### sugars
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**preference hierarchy**: sucrose > glucose >> fructose (in fire ants)
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- fire ant workers strongly prefer sucrose and glucose but show only weak
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attraction to fructose.
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- SinvGr43a is a fructose-responsive gustatory receptor in S. invicta, but it
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acts primarily as an INTERNAL nutrient sensor (linked to neuropeptide
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regulation and lipid metabolism) rather than a peripheral taste receptor.
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- concentration matters: ants discriminate between sucrose concentrations.
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1.0 M sucrose elicits strong behavioral responses (trail-laying, feeding),
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while 0.01 M sucrose does not. in Lasius niger experiments, 0.2 M sucrose
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led to lower food acceptance than 1.0 M.
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- threshold detection in related insects: ~10 mM for antennal sensilla,
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~100 mM for tarsal sensilla (moth data — ant-specific thresholds likely
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similar order of magnitude but not precisely established).
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**confidence: high** for preference hierarchy and concentration discrimination.
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moderate for exact threshold values in ants specifically.
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### amino acids and proteins
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- ants discriminate essential amino acids (EAAs) from non-essential ones.
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- when deficient in both carbs and EAAs and offered sucrose+EAA vs
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sucrose+non-EAA solutions, ants focused foraging on the EAA solution
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regardless of amino acid:carbohydrate ratio.
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- S. invicta workers showed strong preference for leucine (an EAA) over other
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tested amino acids, with preference intensifying at higher concentrations.
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- when choosing between high-protein foods, ants preferred free amino acids
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over whole proteins. no preference emerged with high-carb foods.
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**confidence: high** — multiple controlled experiments across species.
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### salts and minerals
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- Solenopsis richteri workers prefer zinc, magnesium, and ammonium.
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- sodium preference varies and shows a geographical gradient: ants farther from
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the ocean consume more sodium. non-predatory species consume more sodium than
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predatory species (predators get sodium from prey).
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- salts and acids are attractive at low concentrations but aversive at high
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concentrations (inverted U response curve).
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**confidence: high** — field and lab studies.
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### toxins and deterrents
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- quinine is aversive to Lasius niger.
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- high concentrations of caffeine in sucrose reduced feeding in Oecophylla
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smaragdina (weaver ants).
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- alkaloids reduced feeding in Ectatomma ruidum.
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- leaf-cutter ants (Atta, Acromyrmex) avoid leaves containing anti-fungal
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terpenoids that would harm their cultivar fungus.
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**confidence: high** — behavioral assays with known compounds.
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## 2. nutritional assessment and post-ingestive feedback
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### speed of assessment
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ants can compensate for nutritional deficiencies in their colony in under 10
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minutes. this is fast enough that it likely involves rapid nutrient sensing
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rather than slow learning/feedback loops.
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### post-ingestive feedback mechanism
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the term "post-ingestive feedback" refers to the process by which nutrients
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interact with receptors on enteroendocrine cells in the gut after ingestion.
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these cells secrete hormones that signal the brain and other tissues about
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nutrient composition, food texture, and meal size.
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mechanistic details (primarily from Drosophila, likely conserved in ants):
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||||||
|
- Dh44 neurons are necessary and sufficient for post-ingestive nutrient sensing
|
||||||
|
- gut-to-brain signaling uses neuropeptide pathways
|
||||||
|
- the internal fructose sensor GR43a (mentioned above) is part of this system,
|
||||||
|
linking circulating nutrient levels to feeding behavior and lipid metabolism
|
||||||
|
|
||||||
|
**confidence: moderate** — the gut-sensor mechanism is well-established in
|
||||||
|
Drosophila. the specific molecular pathways in ants are inferred by homology
|
||||||
|
rather than directly demonstrated. the behavioral outcomes (rapid compensation)
|
||||||
|
are directly measured in ants.
|
||||||
|
|
||||||
|
### learning and memory about food quality
|
||||||
|
|
||||||
|
- ants can learn which foods are nutritious vs empty calories. foraging
|
||||||
|
motivation and food quality affect both route memory formation speed and the
|
||||||
|
likelihood of returning to a food source.
|
||||||
|
- two parameters dominate quality assessment at a food site:
|
||||||
|
1. **amount of food available** — initially dominates the decision to return
|
||||||
|
2. **reliability of food encounter** — takes precedence after a few visits
|
||||||
|
- ants may learn the location of higher-quality food faster, with most ants
|
||||||
|
eventually congregating at the best source.
|
||||||
|
|
||||||
|
**confidence: high** — direct behavioral experiments.
|
||||||
|
|
||||||
|
|
||||||
|
## 3. the geometric framework for nutrition
|
||||||
|
|
||||||
|
### core concept
|
||||||
|
|
||||||
|
the geometric framework (developed by Simpson & Raubenheimer) models nutrition
|
||||||
|
as a multi-dimensional space where each axis represents a nutrient. animals have
|
||||||
|
an "intake target" — an optimal point in this space — and regulate their feeding
|
||||||
|
to approach it.
|
||||||
|
|
||||||
|
### how it applies to ant colonies
|
||||||
|
|
||||||
|
- colonies have separate appetites for protein and carbohydrate, enabling them
|
||||||
|
to compensate for changes in nutrient density and to select among
|
||||||
|
nutritionally complementary foods.
|
||||||
|
- **workers need carbohydrates** (energy for foraging, maintenance).
|
||||||
|
- **larvae need protein** (growth, development).
|
||||||
|
- this creates a fundamental tension: the colony must collect both, but the
|
||||||
|
ratio shifts with brood load.
|
||||||
|
|
||||||
|
### colony-level regulation
|
||||||
|
|
||||||
|
- in Monomorium pharaonis (pharaoh's ant), colonies defended a slightly
|
||||||
|
carbohydrate-biased intake target.
|
||||||
|
- when confined to imbalanced protein:carbohydrate (P:C) diets, colonies used a
|
||||||
|
"generalist equal-distance strategy": overharvesting BOTH protein and
|
||||||
|
carbohydrate to reach the target ratio, rather than prioritizing one.
|
||||||
|
- ants regulate macronutrient intake at both individual and colony levels,
|
||||||
|
maintaining their specific elemental body composition.
|
||||||
|
|
||||||
|
### what happens when the balance is off
|
||||||
|
|
||||||
|
- when carbohydrate-supplemented, fire ant colonies consumed less cricket and
|
||||||
|
specifically avoided high-lipid ovaries.
|
||||||
|
- when amino-acid-supplemented, they consumed less male cricket (lower lipid,
|
||||||
|
higher protein).
|
||||||
|
- this demonstrates independent regulation of at least protein, carbohydrate,
|
||||||
|
and lipid.
|
||||||
|
|
||||||
|
**confidence: high** — the geometric framework is well-validated across multiple
|
||||||
|
ant species and other social insects.
|
||||||
|
|
||||||
|
|
||||||
|
## 4. food quality and recruitment behavior
|
||||||
|
|
||||||
|
### the pharaoh's ant baseline (Monomorium pharaonis)
|
||||||
|
|
||||||
|
- trail-marking ants deposited significantly more pheromone when returning from
|
||||||
|
high-quality food (1.0 M sucrose) vs low-quality food (0.01 M sucrose).
|
||||||
|
- at low food quality, there was no significant difference in marking intensity
|
||||||
|
between fed and unfed trail-marking ants — the quality signal disappeared.
|
||||||
|
|
||||||
|
### Lasius niger (black garden ant)
|
||||||
|
|
||||||
|
- deposits up to 22x more pheromone within 10 cm of a food source compared to
|
||||||
|
near the nest.
|
||||||
|
- uses an all-or-nothing individual response to food quality (binary: mark or
|
||||||
|
don't mark), which contrasts with Pharaoh's ant graded response.
|
||||||
|
- L. niger is proficient at visual-based orientation, so it's less reliant on
|
||||||
|
pheromone trails than pharaoh's ants.
|
||||||
|
- the presence of existing pheromone trails does NOT influence an individual
|
||||||
|
ant's subjective reward evaluation — they assess food quality independently.
|
||||||
|
|
||||||
|
### general principles across species
|
||||||
|
|
||||||
|
- the more rewarding a food source, the higher the pheromone concentration on
|
||||||
|
the trail.
|
||||||
|
- some species use multiple pheromones: a long-lasting exploration pheromone
|
||||||
|
(weak recruitment) and a shorter-lasting exploitation pheromone (strong
|
||||||
|
recruitment). the exploitation pheromone is deposited preferentially for
|
||||||
|
high-quality food.
|
||||||
|
|
||||||
|
### tandem running (Temnothorax spp.)
|
||||||
|
|
||||||
|
- tandem running is a one-to-one recruitment method where a leader guides a
|
||||||
|
follower from nest to food.
|
||||||
|
- tandem running is favored when food sources are hard to find, differ in
|
||||||
|
energetic value, and are long-lasting.
|
||||||
|
- colonies can adaptively allocate foragers across sources of different quality
|
||||||
|
using tandem running.
|
||||||
|
- followers learn specific routes from leaders — 90% of tandem leaders guided
|
||||||
|
followers along routes they had originally learned as followers themselves.
|
||||||
|
- gene expression: learning and memory genes are specifically upregulated in
|
||||||
|
scouts and tandem-followers.
|
||||||
|
|
||||||
|
### response to environmental change
|
||||||
|
|
||||||
|
- ants strongly upregulate pheromone deposition immediately after experiencing
|
||||||
|
an environmental change (e.g., food source moves or changes quality).
|
||||||
|
- VULNERABILITY: pheromone-based positive feedback can trap colonies at local
|
||||||
|
optima. if a poor feeder is established first, the pheromone trail can
|
||||||
|
outcompete incipient trails to a better source added later. this is a known
|
||||||
|
failure mode of stigmergic systems.
|
||||||
|
|
||||||
|
**confidence: high** — extensive experimental literature across species.
|
||||||
|
|
||||||
|
|
||||||
|
## 5. food source evaluation and decision-making
|
||||||
|
|
||||||
|
### comparing multiple food sources
|
||||||
|
|
||||||
|
- ants integrate food quality with foraging cost (distance, danger).
|
||||||
|
- the marginal value theorem (MVT) predicts: leave a food patch when the
|
||||||
|
current rate of energy gain drops to the average expected rate for the habitat.
|
||||||
|
- in practice: ants stay longer at patches that are farther apart or when
|
||||||
|
current patches are poor (both increase travel-cost-to-benefit ratio).
|
||||||
|
|
||||||
|
### distance vs quality tradeoff
|
||||||
|
|
||||||
|
- closer low-quality food vs farther high-quality food: ants can get trapped at
|
||||||
|
the closer source due to pheromone positive feedback (see vulnerability above).
|
||||||
|
- learning speed differences help: ants learn routes to higher-quality food
|
||||||
|
faster, which can partially overcome the distance disadvantage.
|
||||||
|
- small differences in learning speed for different food qualities can drive
|
||||||
|
efficient collective foraging at the colony level.
|
||||||
|
|
||||||
|
### memory and reassessment
|
||||||
|
|
||||||
|
- ants DO remember food source locations and quality.
|
||||||
|
- assessment updates over multiple visits — initial visits weight "amount of
|
||||||
|
food" heavily, later visits weight "reliability" more.
|
||||||
|
- private information (individual memory) can sometimes trap colonies at local
|
||||||
|
optima, independent of pheromone effects.
|
||||||
|
- ants do NOT appear to actively correct erroneous pheromone trails — trails
|
||||||
|
decay naturally rather than being "erased."
|
||||||
|
|
||||||
|
**confidence: high** for behavioral patterns. the MVT application to ants is
|
||||||
|
well-supported theoretically but ants don't perfectly optimize — they use
|
||||||
|
heuristics that approximate MVT predictions.
|
||||||
|
|
||||||
|
|
||||||
|
## 6. trophallaxis and food quality communication
|
||||||
|
|
||||||
|
### what gets transferred
|
||||||
|
|
||||||
|
trophallactic fluid in Camponotus floridanus contains far more than just food:
|
||||||
|
|
||||||
|
- **nutrients** — sugars, amino acids, lipids
|
||||||
|
- **proteins** — both digestion-related and non-digestion-related. many are
|
||||||
|
regulators of growth, development, and behavioral maturation.
|
||||||
|
- **juvenile hormone III (JH)** — a key developmental regulator. when workers'
|
||||||
|
food was supplemented with JH, larvae they reared via trophallaxis were TWICE
|
||||||
|
as likely to complete metamorphosis and became larger workers.
|
||||||
|
- **JH esterase paralogs** — enzymes that break down JH, providing a
|
||||||
|
regulatory counterbalance.
|
||||||
|
- **cuticular hydrocarbons (CHCs)** — nestmate recognition cues.
|
||||||
|
- **small RNAs (microRNAs)** — potential gene expression regulators.
|
||||||
|
|
||||||
|
### quality information transfer
|
||||||
|
|
||||||
|
- food receivers perceive the odor of food delivered by the donor and associate
|
||||||
|
it with the food reward.
|
||||||
|
- through individual experience, workers evaluate the characteristic information
|
||||||
|
of food and assess its quality.
|
||||||
|
- social information can OVERRIDE individual assessment: carpenter ants
|
||||||
|
receiving social instructions will consume food they would otherwise reject,
|
||||||
|
even toxic food, despite noxious effects. social instruction overrides
|
||||||
|
individual evaluation.
|
||||||
|
|
||||||
|
### the crop as a social stomach
|
||||||
|
|
||||||
|
- the crop (foregut) stores liquids separately from the midgut.
|
||||||
|
- food intended for sharing is kept available for trophallaxis without being
|
||||||
|
fully digested.
|
||||||
|
- this allows ants to act as mobile food storage and distribution units.
|
||||||
|
|
||||||
|
**confidence: high** — proteomic and molecular analysis of trophallactic fluid
|
||||||
|
is well-established, particularly in Camponotus floridanus.
|
||||||
|
|
||||||
|
|
||||||
|
## 7. species-specific food quality concerns
|
||||||
|
|
||||||
|
### fire ants (Solenopsis invicta)
|
||||||
|
|
||||||
|
- omnivorous, regulate protein/carb/lipid independently.
|
||||||
|
- prefer sucrose and leucine, with preference intensifying at higher
|
||||||
|
concentrations.
|
||||||
|
- prefer single-component solutions over multi-component mixtures.
|
||||||
|
- larvae display independent appetites for solid protein, amino acid solution,
|
||||||
|
and sucrose solution.
|
||||||
|
- when infected with SINV-1 virus: reduced foraging, declined lipid intake,
|
||||||
|
shifted preference toward carbohydrate-rich foods.
|
||||||
|
|
||||||
|
### leaf-cutter ants (Atta, Acromyrmex)
|
||||||
|
|
||||||
|
food quality is evaluated at TWO levels: for the ant AND for the fungal
|
||||||
|
cultivar.
|
||||||
|
|
||||||
|
- **leaf selection criteria**: plant chemistry, nutrient content, tenderness,
|
||||||
|
vein thickness, trichome density, endophyte load.
|
||||||
|
- prefer young leaves with soft cuticles, fewer defenses, higher nutritional
|
||||||
|
value.
|
||||||
|
- **fungal feedback**: ants detect chemical signals from the fungus. if a leaf
|
||||||
|
type is toxic to the fungus, the colony stops collecting it. this is a
|
||||||
|
learned colony-level response.
|
||||||
|
- fungus gardens preferentially break down simpler, more digestible substrates
|
||||||
|
first.
|
||||||
|
- the fungus produces specific enzyme profiles in response to different plant
|
||||||
|
substrates (different protein expression for different leaves).
|
||||||
|
- foraged material (fruits, flowers, leaves) is combined to maximize cultivar
|
||||||
|
performance — a multidimensional nutritional optimization.
|
||||||
|
- trace mineral management: concentrations of toxic trace minerals (Cu, Mn, Zn)
|
||||||
|
in foraged leaves peak near the macronutrient intake target, suggesting
|
||||||
|
active regulation of micronutrient toxicity.
|
||||||
|
|
||||||
|
### harvester ants (Pogonomyrmex spp.)
|
||||||
|
|
||||||
|
- seed specialists. selection based on multiple factors:
|
||||||
|
- caloric reward (energy density)
|
||||||
|
- seed size (prefer 3-30 mg in P. rugosus)
|
||||||
|
- protein and energy content (P. salinus preferentially selects
|
||||||
|
Lepidium papilliferum seeds for their higher protein/energy content)
|
||||||
|
- handling time and travel cost
|
||||||
|
- individual foraging choices are labile — converge on the most energetically
|
||||||
|
profitable species over time.
|
||||||
|
- colony dietary history influences individual seed preferences.
|
||||||
|
|
||||||
|
### honeypot ants (Myrmecocystus spp.)
|
||||||
|
|
||||||
|
- specialized repletes (living storage vessels) store liquid carbohydrates.
|
||||||
|
- foragers collect sweet exudates from cynipid galls and regurgitate to repletes
|
||||||
|
via trophallaxis.
|
||||||
|
- replete honey composition: primarily glucose and fructose, ~67g sugar per
|
||||||
|
100g, pH 3.85.
|
||||||
|
- the crop keeps food separated from the midgut so it remains available for
|
||||||
|
redistribution without being digested.
|
||||||
|
- when food is scarce, the process reverses: repletes regurgitate stored sugar
|
||||||
|
to feed the colony.
|
||||||
|
|
||||||
|
### Temnothorax spp. (acorn/rock ants)
|
||||||
|
|
||||||
|
- use tandem running rather than mass recruitment.
|
||||||
|
- stored excess food is sufficient for reducing protein foraging — colonies with
|
||||||
|
food reserves are less responsive to protein opportunities.
|
||||||
|
- small colonies respond more strongly to larval demand signals than large ones.
|
||||||
|
|
||||||
|
**confidence: high for fire ants and leaf-cutters** (extensively studied).
|
||||||
|
moderate for harvester ants (good behavioral data, less molecular detail).
|
||||||
|
moderate for honeypot ants (descriptive natural history is solid, mechanistic
|
||||||
|
data is thinner).
|
||||||
|
|
||||||
|
|
||||||
|
## 8. larval nutritional signaling
|
||||||
|
|
||||||
|
### the demand chain
|
||||||
|
|
||||||
|
nutritional information flows through a hierarchical demand chain:
|
||||||
|
|
||||||
|
larvae → nurses → foragers → environment
|
||||||
|
|
||||||
|
1. **larvae signal hunger** via non-volatile contact pheromones and begging
|
||||||
|
behaviors (physical solicitation).
|
||||||
|
2. **nurses respond** by soliciting food from foragers or from stored reserves.
|
||||||
|
3. **foragers adjust** foraging effort and target macronutrient composition based
|
||||||
|
on upstream demand.
|
||||||
|
|
||||||
|
### larval pheromone effects (dose-dependent)
|
||||||
|
|
||||||
|
- workers in colonies WITH larvae increase foraging activity compared to
|
||||||
|
broodless colonies.
|
||||||
|
- workers suppress ovarian activation in the presence of larvae (progressive
|
||||||
|
effect — stronger in smaller colonies).
|
||||||
|
- the response is dose-dependent: more larvae = stronger foraging drive +
|
||||||
|
stronger ovarian suppression.
|
||||||
|
|
||||||
|
### specificity of demand
|
||||||
|
|
||||||
|
- the chain is nutrient-specific. ants can match foraging to deficiencies in
|
||||||
|
single amino acids, suggesting the demand signal carries information about
|
||||||
|
WHAT is needed, not just "feed me."
|
||||||
|
- workers shift foraging toward protein-rich sources when larval demand is high
|
||||||
|
(more brood = more protein foraging).
|
||||||
|
- in Temnothorax longispinosus, stored excess food alone is sufficient to reduce
|
||||||
|
protein foraging — the colony tracks its reserves.
|
||||||
|
|
||||||
|
### information propagation in large colonies
|
||||||
|
|
||||||
|
- in small colonies, direct larva-worker contact may suffice.
|
||||||
|
- in larger colonies, larval pheromones may propagate through the trophallaxis
|
||||||
|
network: transferred from nurse to forager via oral fluid exchange, carrying
|
||||||
|
the chemical signal deeper into the nest.
|
||||||
|
- this is less well-characterized mechanistically than the direct-contact
|
||||||
|
pathway.
|
||||||
|
|
||||||
|
**confidence: high** for the existence and behavioral effects of the demand
|
||||||
|
chain. moderate for the specific molecular identity of larval hunger pheromones.
|
||||||
|
the propagation mechanism in large colonies is plausible but not definitively
|
||||||
|
demonstrated.
|
||||||
|
|
||||||
|
|
||||||
|
## simulation implications
|
||||||
|
|
||||||
|
key parameters to model for food quality in the simulation:
|
||||||
|
|
||||||
|
1. **food quality value (0-255, already allocated in world.R bits 6-13)**
|
||||||
|
- maps to sugar concentration / caloric density
|
||||||
|
- affects pheromone deposition intensity (graded or binary per species model)
|
||||||
|
- affects recruitment strength
|
||||||
|
|
||||||
|
2. **colony nutritional state**
|
||||||
|
- protein vs carbohydrate balance (two-axis model from geometric framework)
|
||||||
|
- brood load shifts target toward protein
|
||||||
|
- deficit in either axis biases forager preferences
|
||||||
|
|
||||||
|
3. **individual forager memory**
|
||||||
|
- food source location + quality rating
|
||||||
|
- updates over visits (amount → reliability weighting shift)
|
||||||
|
- learning speed proportional to food quality
|
||||||
|
|
||||||
|
4. **trophallaxis network effects**
|
||||||
|
- quality information propagates through social feeding
|
||||||
|
- social information can override individual assessment
|
||||||
|
- larval demand propagates upstream through nurses to foragers
|
||||||
|
|
||||||
|
5. **pheromone trail modulation**
|
||||||
|
- trail intensity proportional to food quality (above some threshold)
|
||||||
|
- dual-pheromone option: exploration (weak, long-lived) vs exploitation
|
||||||
|
(strong, short-lived)
|
||||||
|
- trap risk: established trails to poor sources resist switching
|
||||||
|
|
||||||
|
6. **distance-quality tradeoff**
|
||||||
|
- not a simple linear comparison — pheromone feedback creates path dependence
|
||||||
|
- closer poor food can dominate farther good food due to positive feedback
|
||||||
|
- learning speed differences partially compensate
|
||||||
|
|
||||||
|
|
||||||
|
## sources
|
||||||
|
|
||||||
|
- [Preference and effect of gustatory sense on sugar-feeding of fire ants](https://peerj.com/articles/11943/)
|
||||||
|
- [A fructose-sensitive gustatory receptor in fire ants](https://www.sciencedirect.com/science/article/abs/pii/S0965174825001845)
|
||||||
|
- [Detection of sweet tastants by insect gustatory receptors](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3910600/)
|
||||||
|
- [Ant foragers compensate for nutritional deficiencies in the colony](https://www.cell.com/current-biology/fulltext/S0960-9822(19)31458-7)
|
||||||
|
- [Flexible, but not enough: how an omnivorous ant copes with macronutrient imbalances](https://nsojournals.onlinelibrary.wiley.com/doi/abs/10.1002/oik.11557)
|
||||||
|
- [Nutritional geometry of Monomorium pharaonis](https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0218764)
|
||||||
|
- [Carbohydrate regulation in relation to colony growth](https://journals.biologists.com/jeb/article/211/14/2224/17598/Carbohydrate-regulation-in-relation-to-colony)
|
||||||
|
- [Ant nutritional ecology: linking nutritional niche plasticity](https://www.sciencedirect.com/science/article/abs/pii/S221457451400090X)
|
||||||
|
- [Modulation of pheromone trail strength with food quality in pharaoh's ant](https://www.sciencedirect.com/science/article/abs/pii/S0003347207002278)
|
||||||
|
- [Lasius niger pheromone deposition near food sources](https://link.springer.com/article/10.1007/s00040-024-00995-y)
|
||||||
|
- [Trail pheromone does not modulate subjective reward evaluation in L. niger](https://pmc.ncbi.nlm.nih.gov/articles/PMC7540218/)
|
||||||
|
- [The role of multiple pheromones in food recruitment](https://journals.biologists.com/jeb/article/212/15/2337/18424/The-role-of-multiple-pheromones-in-food)
|
||||||
|
- [Trail pheromones of ants (review)](https://resjournals.onlinelibrary.wiley.com/doi/10.1111/j.1365-3032.2008.00658.x)
|
||||||
|
- [Food information acquired socially overrides individual assessment](https://link.springer.com/article/10.1007/s00265-016-2216-x)
|
||||||
|
- [Social transmission of information via trophallaxis](https://royalsocietypublishing.org/doi/10.1098/rspb.2017.1367)
|
||||||
|
- [Oral transfer of chemical cues, growth proteins and hormones in social insects](https://elifesciences.org/articles/20375)
|
||||||
|
- [Molecular evolution of JH esterase-like proteins in trophallactic fluid](https://www.nature.com/articles/s41598-018-36048-1)
|
||||||
|
- [Preferences for sugars and amino acids in nectar-feeding ants](https://besjournals.onlinelibrary.wiley.com/doi/full/10.1111/j.1365-2656.2004.00789.x)
|
||||||
|
- [Effects of macro- and micro-nutrients on feeding responses by ants](https://www.nature.com/articles/s41598-024-56133-y)
|
||||||
|
- [Dietary diversity, sociality, and the evolution of ant gustation](https://www.frontiersin.org/journals/ecology-and-evolution/articles/10.3389/fevo.2023.1175719/full)
|
||||||
|
- [Feeding preferences for sugars and amino acids in fire ants](https://www.mdpi.com/2075-4450/17/3/258)
|
||||||
|
- [Regulation of diet in the fire ant](https://link.springer.com/article/10.1023/A:1020835304713)
|
||||||
|
- [Route learning during tandem running in Temnothorax](https://journals.biologists.com/jeb/article/223/9/jeb221408/223803/Route-learning-during-tandem-running-in-the-rock)
|
||||||
|
- [Teaching in tandem-running ants](https://pubmed.ncbi.nlm.nih.gov/16407943/)
|
||||||
|
- [Tandem-running and scouting characterized by learning/memory gene upregulation](https://pubmed.ncbi.nlm.nih.gov/30903719/)
|
||||||
|
- [Temnothorax adjusts tandem running when distance exposes them to greater risks](https://link.springer.com/article/10.1007/s00265-018-2453-2)
|
||||||
|
- [Ant larvae regulate worker foraging behavior and ovarian activity dose-dependently](https://pmc.ncbi.nlm.nih.gov/articles/PMC5015688/)
|
||||||
|
- [Stored excess food reduces protein foraging in Temnothorax](https://link.springer.com/article/10.1007/s00265-025-03683-4)
|
||||||
|
- [Foraging and feeding independently regulated in clonal raider ant](https://link.springer.com/article/10.1007/s00265-021-02985-7)
|
||||||
|
- [Ants adjust pheromone deposition to changing environment](https://pmc.ncbi.nlm.nih.gov/articles/PMC4590477/)
|
||||||
|
- [Private information can trap colonies in local feeding optima](https://journals.biologists.com/jeb/article/219/5/744/16615/Private-information-alone-can-trigger-trapping-of)
|
||||||
|
- [Small differences in learning speed drive efficient collective foraging](https://link.springer.com/article/10.1007/s00265-018-2583-6)
|
||||||
|
- [Re-visiting plentiful food sources in desert ants](https://pmc.ncbi.nlm.nih.gov/articles/PMC3389614/)
|
||||||
|
- [Fungal cultivar of leaf-cutters produces specific enzymes per plant substrate](https://pmc.ncbi.nlm.nih.gov/articles/PMC5118115/)
|
||||||
|
- [Multidimensional nutritional niche of leaf-cutter fungus provisioning](https://pmc.ncbi.nlm.nih.gov/articles/PMC9292433/)
|
||||||
|
- [Evolutionary innovation of nutritional symbioses in leaf-cutters](https://pmc.ncbi.nlm.nih.gov/articles/PMC4553616/)
|
||||||
|
- [Seed selection by Pogonomyrmex rugosus](https://pubmed.ncbi.nlm.nih.gov/27257121/)
|
||||||
|
- [Flexible seed selection by Pogonomyrmex occidentalis](https://link.springer.com/article/10.1007/BF00164118)
|
||||||
|
- [Honeypot ant (Myrmecocystus) — Wikipedia](https://en.wikipedia.org/wiki/Honeypot_ant)
|
||||||
|
- [Evolutionary origins of repletism in ants](https://blog.myrmecologicalnews.org/2023/05/31/shedding-light-on-the-evolutionary-origins-of-repletism-in-ants/)
|
||||||
407
docs/PHEROMONES.md
Normal file
407
docs/PHEROMONES.md
Normal file
|
|
@ -0,0 +1,407 @@
|
||||||
|
# Ant Pheromone Biology
|
||||||
|
|
||||||
|
Reference doc on ant pheromone types, chemistry, triggers, and environmental
|
||||||
|
factors. Organized for simulation design — what matters for modeling, what
|
||||||
|
the real biology says, and where the data is thin.
|
||||||
|
|
||||||
|
|
||||||
|
## Pheromone types
|
||||||
|
|
||||||
|
### Trail pheromones
|
||||||
|
|
||||||
|
Guide nestmates to food, new nest sites, or other resources. Encode distance
|
||||||
|
and quality information through concentration gradients.
|
||||||
|
|
||||||
|
Gland sources vary by subfamily:
|
||||||
|
- Poison gland (most Myrmicinae — stinging ants)
|
||||||
|
- Dufour's gland (most Formicinae — non-venomous ants)
|
||||||
|
- Pygidial gland, sternal glands, hindgut (various)
|
||||||
|
|
||||||
|
Known compounds by species:
|
||||||
|
|
||||||
|
species compound gland
|
||||||
|
Atta texana, A. cephalotes methyl 4-methylpyrrole-2-carboxylate poison
|
||||||
|
Atta sexdens rubropilosa 3-ethyl-2,5-dimethylpyrazine poison
|
||||||
|
Tetramorium caespitum 70:30 2,5-dimethylpyrazine + EDMP poison
|
||||||
|
Tetramorium meridionale indole (major) + 4 pyrazines poison
|
||||||
|
Monomorium pharaonis (E,E)-faranal poison
|
||||||
|
Myrmica spp. EDMP + homofarnesenes poison + Dufour's
|
||||||
|
Solenopsis invicta various poison
|
||||||
|
|
||||||
|
Volatility is a feature — trails evaporate in minutes to hours, so paths to
|
||||||
|
depleted food naturally fade. The evaporation rate is effectively the colony's
|
||||||
|
spatial memory duration.
|
||||||
|
|
||||||
|
### Alarm pheromones
|
||||||
|
|
||||||
|
Fast-acting signals that trigger either panic (flee) or aggression (attack)
|
||||||
|
depending on species, colony size, and context.
|
||||||
|
|
||||||
|
Triggers:
|
||||||
|
- Physical disturbance of nest or individual
|
||||||
|
- Predator detection (olfactory, visual, or tactile)
|
||||||
|
- Crushing/injury of nestmates (damaged ants release alarm compounds)
|
||||||
|
- Intrusion by non-nestmates
|
||||||
|
|
||||||
|
Known compounds:
|
||||||
|
|
||||||
|
compound species gland
|
||||||
|
4-methyl-3-heptanone Atta, Pogonomyrmex, Ooceraea mandibular
|
||||||
|
formic acid Formica, Camponotus poison
|
||||||
|
n-undecane Camponotus, many Formicinae Dufour's
|
||||||
|
2-heptanone Iridomyrmex pruinosus mandibular
|
||||||
|
3-octanol Acromyrmex echinatior mandibular
|
||||||
|
3-octanone Acromyrmex octospinosus mandibular
|
||||||
|
(S)-(-)-citronellal Platythyrea punctata mandibular
|
||||||
|
(S)-(-)-actinidine Platythyrea punctata mandibular
|
||||||
|
|
||||||
|
Behavioral response sequence: stop movement -> swing antennae -> alerted
|
||||||
|
posture -> species-specific response (flee or attack). Larger species and
|
||||||
|
larger colonies tend toward aggression; smaller species tend toward evacuation.
|
||||||
|
|
||||||
|
#### Carpenter ant alarm system (formic acid + n-undecane)
|
||||||
|
|
||||||
|
Two-component blend from two different glands:
|
||||||
|
- Formic acid (poison gland) -> avoidance behavior, move away from source
|
||||||
|
- n-Undecane (Dufour's gland) -> attraction toward source, approach to attack
|
||||||
|
|
||||||
|
Each component alone produces a distinct response. Together they create the
|
||||||
|
full alarm sequence: alert, then approach and aggress. Formic acid also
|
||||||
|
modulates nestmate recognition — puts ants into a heightened discriminatory
|
||||||
|
state where they're more likely to attack non-nestmates.
|
||||||
|
|
||||||
|
Processed in ~5 specific "alarm-sensitive" glomeruli clustered in the
|
||||||
|
dorsalmost part of the antennal lobe, relayed to the lateral horn.
|
||||||
|
|
||||||
|
#### What triggers alarm? Plants? Predators?
|
||||||
|
|
||||||
|
No strong evidence for specific plants that trigger false alarm responses,
|
||||||
|
though some alarm compounds (citronellal) are also found in plant oils, so
|
||||||
|
cross-reactivity is plausible. Some alarm compounds (citral, 2-heptanone,
|
||||||
|
4-methyl-3-heptanone) have antifungal properties, suggesting a dual role in
|
||||||
|
pathogen defense — the alarm system may have originally evolved as an
|
||||||
|
antimicrobial response.
|
||||||
|
|
||||||
|
Main natural triggers are physical: nest disturbance, predator contact, and
|
||||||
|
injured nestmates releasing their contents. The "danger zone" concept maps
|
||||||
|
best to areas where nestmates have been injured or where persistent threats
|
||||||
|
exist, not to specific environmental chemicals.
|
||||||
|
|
||||||
|
### Repellent / negative pheromone
|
||||||
|
|
||||||
|
Deposited at trail junctions leading to unrewarding branches. Prevents the
|
||||||
|
colony from getting stuck on depleted food. Key details from Pharaoh's ant
|
||||||
|
studies:
|
||||||
|
- Lasts ~2x longer than attractive trail pheromone (~78 min vs ~33 min)
|
||||||
|
- Ants encountering it U-turn or zigzag
|
||||||
|
- Deposited specifically at bifurcation points, not along entire failed paths
|
||||||
|
|
||||||
|
Source: Nature 438, 442 (2005)
|
||||||
|
|
||||||
|
### Queen pheromones
|
||||||
|
|
||||||
|
Complex, multifunctional. Known effects:
|
||||||
|
- Attract workers for queen attendance
|
||||||
|
- Promote brood care
|
||||||
|
- Induce nestmate discrimination
|
||||||
|
- Inhibit larval sexual development (through worker behaviors)
|
||||||
|
- Suppress reproduction in other queens and workers
|
||||||
|
- Induce worker policing of reproductive workers
|
||||||
|
- Mediate queen acceptance/rejection in polygyne colonies
|
||||||
|
|
||||||
|
Chemistry is poorly characterized compared to trail/alarm pheromones. Involves
|
||||||
|
cuticular hydrocarbons and at least one dedicated odorant receptor (HsOr263 in
|
||||||
|
Harpegnathos saltator). Difficult to isolate because the signal may be a
|
||||||
|
complex blend rather than a single compound.
|
||||||
|
|
||||||
|
### Necrophoresis / death pheromones
|
||||||
|
|
||||||
|
Trigger corpse removal for nest hygiene. Dual-signal system:
|
||||||
|
|
||||||
|
1. Loss of "life signals": living ants produce dolichodial and iridomyrmecin
|
||||||
|
on their cuticle. These disappear within ~60 minutes of death. Their absence
|
||||||
|
is the initial trigger.
|
||||||
|
|
||||||
|
2. Gain of "death signals": oleic acid and linoleic acid accumulate as the
|
||||||
|
corpse decomposes. These are the classical necrophoresis triggers.
|
||||||
|
|
||||||
|
Timing: only 15% of freshly killed corpses get removed. Rises to 80% for
|
||||||
|
corpses 1-6 days post-mortem as fatty acids accumulate. The colony doesn't
|
||||||
|
panic-clean — it waits for chemical confirmation.
|
||||||
|
|
||||||
|
### Propaganda pheromones
|
||||||
|
|
||||||
|
Used by slave-making (dulotic) ants during raids. Polyergus queens enter
|
||||||
|
Formica host nests, kill the resident queen, acquire her chemical profile,
|
||||||
|
and release substances from an enlarged Dufour's gland that reduce worker
|
||||||
|
aggression. Raiding workers release:
|
||||||
|
- Manipulative alarm signals (cause panic, disorganized defense)
|
||||||
|
- Chemical weapons (directly repellent)
|
||||||
|
- Appeasement substances (reduce aggression toward the raider)
|
||||||
|
|
||||||
|
Stolen brood are chemically imprinted after eclosion, causing them to identify
|
||||||
|
the slave-maker colony as home.
|
||||||
|
|
||||||
|
### Cuticular hydrocarbons (CHCs) — colony recognition
|
||||||
|
|
||||||
|
Not classical volatile pheromones but contact chemicals on the cuticle. Each
|
||||||
|
colony has a distinctive CHC profile — a blend of dozens of hydrocarbons that
|
||||||
|
workers learn and use to distinguish nestmates from non-nestmates. Non-nestmates
|
||||||
|
are attacked. The postpharyngeal gland stores and distributes CHCs, homogenizing
|
||||||
|
the colony odor through trophallaxis (food sharing).
|
||||||
|
|
||||||
|
### Recruitment pheromones
|
||||||
|
|
||||||
|
Functionally distinct from trail pheromones in some species. In Leptogenys
|
||||||
|
diminuta, two gland sources serve different roles:
|
||||||
|
- Poison gland secretions: orientation cues (where to go)
|
||||||
|
- Pygidial gland secretions: recruitment stimulus (leave the nest and follow)
|
||||||
|
|
||||||
|
This separation means "follow this path" and "come help" are independent
|
||||||
|
signals that can be modulated separately.
|
||||||
|
|
||||||
|
### Brood pheromones
|
||||||
|
|
||||||
|
Signals from eggs, larvae, and pupae that attract worker care. Help workers
|
||||||
|
assess developmental stage and nutritional needs. Part of the demand chain
|
||||||
|
that links larval nutritional needs -> nurse behavior -> forager food
|
||||||
|
preferences. Less well-characterized than adult pheromones.
|
||||||
|
|
||||||
|
### Sex / mating pheromones
|
||||||
|
|
||||||
|
Released by virgin queens (gynes) to attract males during nuptial flights.
|
||||||
|
Less studied than other types. Identified in Polyergus breviceps.
|
||||||
|
|
||||||
|
|
||||||
|
## Food quality
|
||||||
|
|
||||||
|
### What "quality" means to ants
|
||||||
|
|
||||||
|
Primarily macronutrient content — the protein-to-carbohydrate (P:C) ratio.
|
||||||
|
Different colony members need different things:
|
||||||
|
- Workers need carbohydrates (energy for foraging, maintenance)
|
||||||
|
- Larvae and queens need protein (growth, egg production)
|
||||||
|
- Foragers collect for the colony's current needs, relayed through a demand
|
||||||
|
chain: larvae -> nurses -> foragers
|
||||||
|
|
||||||
|
Sugar concentration is the primary quality axis for foraging workers. In the
|
||||||
|
key Pharaoh's ant study, 1.0 M sucrose = "high quality" and 0.01 M sucrose =
|
||||||
|
"low quality."
|
||||||
|
|
||||||
|
Species-specific sugar preferences exist — carpenter ants (Camponotus modoc)
|
||||||
|
and European fire ants (Myrmica rubra) show selective preferences for specific
|
||||||
|
mono-, di-, and trisaccharides. Not all sugars are equal.
|
||||||
|
|
||||||
|
### How ants assess quality
|
||||||
|
|
||||||
|
Two mechanisms:
|
||||||
|
1. Contact chemoreception — tasting with mouthparts and antennae
|
||||||
|
2. Post-ingestive feedback — evaluating nutritional content after consumption
|
||||||
|
|
||||||
|
Colony-level nutritional regulation follows a "geometric framework" model:
|
||||||
|
colonies actively balance P:C intake, shifting forager preferences based on
|
||||||
|
current deficits. A protein-starved colony will recruit more aggressively
|
||||||
|
to protein sources.
|
||||||
|
|
||||||
|
### How quality modulates pheromone deposition
|
||||||
|
|
||||||
|
The Pharaoh's ant study (Jackson, Holcombe & Ratnieks 2004/2007):
|
||||||
|
- Trail marking occurs at ~40% frequency among both fed and unfed foragers
|
||||||
|
- High quality food (1.0 M sucrose) -> significantly more high-intensity
|
||||||
|
continuous marking
|
||||||
|
- Low quality food (0.01 M sucrose) -> no significant difference in marking
|
||||||
|
intensity between fed and unfed ants
|
||||||
|
- This is a graded individual response — ants modulate marking intensity,
|
||||||
|
not all-or-nothing
|
||||||
|
|
||||||
|
Contrast with Lasius niger, where trail strength modulation IS all-or-nothing
|
||||||
|
at the individual level — an ant either marks or doesn't, based on quality.
|
||||||
|
The difference: Pharaoh's ants live in dark enclosed spaces and rely heavily
|
||||||
|
on pheromone trails, so they must always produce some trail. L. niger can use
|
||||||
|
visual orientation and afford to skip trail-laying entirely for poor food.
|
||||||
|
|
||||||
|
Ants also adjust deposition based on environmental uncertainty — they modulate
|
||||||
|
trail marking in response to changing conditions and their error probability
|
||||||
|
(Czaczkes et al. 2015).
|
||||||
|
|
||||||
|
### Simulation relevance
|
||||||
|
|
||||||
|
For the sim, food quality maps to a 0-255 value stored in cell metadata bits.
|
||||||
|
When an ant picks up food, it reads the quality and stores it as cargoQuality.
|
||||||
|
The deposition multiplier would scale pheromone output — high quality food
|
||||||
|
gets stronger trails, attracting more ants. The colony naturally converges on
|
||||||
|
the best source first, then shifts when it depletes.
|
||||||
|
|
||||||
|
"Different types of food" is less important than "different concentrations."
|
||||||
|
Real ants care about sugar molarity and protein content, not food identity.
|
||||||
|
For the sim, a single quality scalar captures the essential dynamics.
|
||||||
|
|
||||||
|
|
||||||
|
## Pheromone detection
|
||||||
|
|
||||||
|
### Olfactory receptor genes
|
||||||
|
|
||||||
|
Ants have 300-500 odorant receptor (Or) genes — 4-5x more than most insects
|
||||||
|
(Drosophila has ~60). This expansion predates complex sociality but facilitated
|
||||||
|
it. A specialized 9-exon Or gene subfamily detects cuticular hydrocarbons and
|
||||||
|
candidate pheromones.
|
||||||
|
|
||||||
|
### Antennal lobe glomeruli
|
||||||
|
|
||||||
|
Each Or gene roughly corresponds to one glomerulus in the antennal lobe.
|
||||||
|
|
||||||
|
species glomeruli count
|
||||||
|
Apterostigma cf. mayri ~630
|
||||||
|
Camponotus (carpenter) ~430-460
|
||||||
|
Apis mellifera (honeybee) ~163
|
||||||
|
Drosophila melanogaster ~43
|
||||||
|
|
||||||
|
Workers have more glomeruli than males, reflecting greater need for chemical
|
||||||
|
discrimination. Worker and queen antennal lobes differ in composition and
|
||||||
|
Or expression.
|
||||||
|
|
||||||
|
|
||||||
|
## Environmental effects on pheromones
|
||||||
|
|
||||||
|
### Temperature
|
||||||
|
|
||||||
|
High temperatures accelerate degradation. Above ~40C, workers cannot
|
||||||
|
discriminate previously-marked substrate. Above ~30C, foraging activity drops
|
||||||
|
partly because trails decay too quickly to be useful.
|
||||||
|
|
||||||
|
Different compounds have different thermal stability: in Tapinoma nigerrimum,
|
||||||
|
most gaster secretions vanished at 25C, but iridodials persisted up to 55C.
|
||||||
|
Aphaenogaster senilis secretions resisted elevated temperatures better.
|
||||||
|
|
||||||
|
Pheromone persistence = f(temperature, time since deposition). Both interact —
|
||||||
|
higher temperature accelerates decay at all time points.
|
||||||
|
|
||||||
|
### Humidity
|
||||||
|
|
||||||
|
Higher humidity slows evaporation of polar pheromone components. Specific
|
||||||
|
experimental data is sparser than for temperature. The effect is real but
|
||||||
|
less dramatic than temperature in most contexts.
|
||||||
|
|
||||||
|
### Substrate surface
|
||||||
|
|
||||||
|
Porous surfaces absorb pheromone and release it slowly (longer persistence).
|
||||||
|
Smooth impermeable surfaces allow faster evaporation (shorter persistence).
|
||||||
|
|
||||||
|
Direct experimental data on ants is thin — the Pharaoh's ant study
|
||||||
|
(~9 min on plastic, ~3 min on paper) is one of the few quantitative
|
||||||
|
comparisons. The physics is well understood but species-specific measurements
|
||||||
|
are rare.
|
||||||
|
|
||||||
|
### Volatility as design feature
|
||||||
|
|
||||||
|
Trail pheromone volatility provides automatic negative feedback — trails to
|
||||||
|
depleted food fade without any active erasure. The evaporation rate sets the
|
||||||
|
colony's spatial memory duration. Too fast = no useful trails. Too slow =
|
||||||
|
colony gets stuck on depleted paths. Evolution tuned this balance per species
|
||||||
|
and habitat.
|
||||||
|
|
||||||
|
|
||||||
|
## Colony-level dynamics
|
||||||
|
|
||||||
|
### Colony size effects
|
||||||
|
|
||||||
|
Larger colonies have higher collective response thresholds. The relationship
|
||||||
|
is driven by social feedback — short-range excitatory and long-range
|
||||||
|
inhibitory interactions. In army ants, increasing colony size causes a
|
||||||
|
qualitative behavioral shift: organized search patterns in small colonies
|
||||||
|
give way to spontaneous mass raids in large ones.
|
||||||
|
|
||||||
|
Per-capita interaction rate is roughly scale-invariant — connectivity scales
|
||||||
|
hypometrically with colony size.
|
||||||
|
|
||||||
|
### Colony state modulates pheromone dynamics
|
||||||
|
|
||||||
|
- Protein-starved colonies shift forager preferences toward protein, changing
|
||||||
|
trail deposition patterns (more intense marking to protein sources)
|
||||||
|
- Carbohydrate-rich diets increase social immunity
|
||||||
|
- Weakly volatile "aggregation" pheromones mark the nest site as a constant
|
||||||
|
baseline signal anchoring the colony spatially
|
||||||
|
|
||||||
|
### "Colony mood"
|
||||||
|
|
||||||
|
Not a scientific term, but maps onto real dynamics:
|
||||||
|
- Alarm state propagates as more individuals detect alarm compounds and
|
||||||
|
release their own (positive feedback cascade)
|
||||||
|
- Foraging motivation modulated by colony nutritional state — hungry colonies
|
||||||
|
produce stronger recruitment signals
|
||||||
|
- The exploration/exploitation balance shifts with colony experience and
|
||||||
|
environmental conditions
|
||||||
|
|
||||||
|
|
||||||
|
## Sources
|
||||||
|
|
||||||
|
Pharaoh's ant pheromone modulation
|
||||||
|
Jackson, Holcombe & Ratnieks 2004/2007
|
||||||
|
ScienceDirect S0003347207002278
|
||||||
|
|
||||||
|
Negative pheromone
|
||||||
|
Nature 438, 442 (2005)
|
||||||
|
|
||||||
|
Alarm pheromone processing (carpenter ants)
|
||||||
|
PMC2912167
|
||||||
|
|
||||||
|
Alarm pheromone in clonal raider ant
|
||||||
|
PMC9941220
|
||||||
|
|
||||||
|
Formic acid + nestmate recognition
|
||||||
|
J Exp Biol 224(20) jeb242784
|
||||||
|
|
||||||
|
Necrophoresis dual signals
|
||||||
|
PNAS 0901270106
|
||||||
|
|
||||||
|
Corpse chemical changes
|
||||||
|
J Chem Ecol 10.1007/s10886-013-0365-1
|
||||||
|
|
||||||
|
Slave-maker chemical warfare
|
||||||
|
PLOS ONE 10.1371/journal.pone.0147498
|
||||||
|
|
||||||
|
Queen pheromone properties
|
||||||
|
Behav Ecol Sociobiol 10.1007/s00265-023-03378-8
|
||||||
|
|
||||||
|
Trail pheromone review
|
||||||
|
Morgan 2009, Physiological Entomology
|
||||||
|
10.1111/j.1365-3032.2008.00658.x
|
||||||
|
|
||||||
|
Trail pheromone compound list
|
||||||
|
Natural Product Communications 10.1177/1934578X1400900813
|
||||||
|
|
||||||
|
Odorant receptors in social insects
|
||||||
|
Nature Communications 10.1038/s41467-017-00099-1
|
||||||
|
|
||||||
|
Pheromone-sensitive glomeruli
|
||||||
|
Proc R Soc B 10.1098/rspb.2006.3565
|
||||||
|
|
||||||
|
Olfactory system review
|
||||||
|
PMC8002415
|
||||||
|
|
||||||
|
Ant olfactory receptor expansion
|
||||||
|
Vanderbilt (2012)
|
||||||
|
|
||||||
|
Temperature effects on trail following
|
||||||
|
J Chem Ecol 10.1007/s10886-012-0130-x
|
||||||
|
|
||||||
|
Colony interaction scaling
|
||||||
|
Frontiers in Ecology and Evolution 10.3389/fevo.2022.993627
|
||||||
|
|
||||||
|
Collective sensory threshold
|
||||||
|
PNAS 10.1073/pnas.2123076119
|
||||||
|
|
||||||
|
Ant nutritional ecology
|
||||||
|
ScienceDirect S221457451400090X
|
||||||
|
|
||||||
|
Nutrient regulation
|
||||||
|
Myrmecological News (Csata & Dussutour 2019)
|
||||||
|
|
||||||
|
Exocrine glands of ants
|
||||||
|
Chemoecology 10.1007/BF01256548
|
||||||
|
|
||||||
|
Sugar preferences
|
||||||
|
PMC8371376
|
||||||
|
|
||||||
|
Pheromone deposition under uncertainty
|
||||||
|
Czaczkes et al. 2015, PMC4590477
|
||||||
227
docs/TERRAIN-AND-DECAY.md
Normal file
227
docs/TERRAIN-AND-DECAY.md
Normal file
|
|
@ -0,0 +1,227 @@
|
||||||
|
# terrain, substrates, and pheromone decay
|
||||||
|
|
||||||
|
how environmental factors affect pheromone persistence. relevant to feature #7
|
||||||
|
(substrate-dependent decay) and the worldBlur shader's per-cell decay rate.
|
||||||
|
|
||||||
|
|
||||||
|
## substrate effects on persistence
|
||||||
|
|
||||||
|
the key study is Jeanson et al. (2003) on Monomorium pharaonis:
|
||||||
|
|
||||||
|
substrate chemical half-life behavioral preference half-life
|
||||||
|
plastic ~9 min ~25 min
|
||||||
|
paper ~3 min ~8 min
|
||||||
|
|
||||||
|
a 3x difference in chemical half-life between two smooth artificial surfaces.
|
||||||
|
mechanism: paper is porous and wicks the compound away from the surface,
|
||||||
|
reducing the airborne concentration ants detect. plastic is non-porous, so the
|
||||||
|
compound sits on top and remains available.
|
||||||
|
|
||||||
|
no comparable controlled study exists for natural substrates (soil, rock, sand,
|
||||||
|
leaf litter, wood). inferred from physical chemistry:
|
||||||
|
|
||||||
|
- porous substrates (soil, sand, wood, leaf litter) behave more like paper —
|
||||||
|
absorb compounds, accelerate apparent decay
|
||||||
|
- non-porous substrates (rock, packed clay) behave more like plastic — keep
|
||||||
|
compounds on the surface, slower decay
|
||||||
|
- soil moisture complicates things further (see humidity section)
|
||||||
|
|
||||||
|
|
||||||
|
## species variation in baseline trail longevity
|
||||||
|
|
||||||
|
trail pheromone persistence varies enormously across species:
|
||||||
|
|
||||||
|
species trail longevity notes
|
||||||
|
Solenopsis invicta ~100 sec / <2 min extremely volatile compounds
|
||||||
|
Monomorium pharaonis ~9 min (plastic) multiple pheromone types
|
||||||
|
Aphaenogaster albisetosus minutes short-lived
|
||||||
|
Pachycondyla sennaarensis ~30 min to half gone in 1 hr
|
||||||
|
Monomorium spp. (general) ~1 day optimal varies
|
||||||
|
Camponotus (carpenter ants) days hindgut-produced
|
||||||
|
Daceton armigerum 7+ days poison gland secretion
|
||||||
|
Eciton spp. (army ants) weeks long-chain, low-volatility
|
||||||
|
|
||||||
|
the range is >100x. species in stable environments with permanent food sources
|
||||||
|
use long-lasting compounds. species exploiting ephemeral food use volatile ones.
|
||||||
|
|
||||||
|
Pharaoh's ants also use multiple pheromone types with different decay profiles:
|
||||||
|
a long-lasting attractive pheromone, a short-lived attractive pheromone, and a
|
||||||
|
short-lived repellent pheromone (~78 min vs ~33 min half-life).
|
||||||
|
|
||||||
|
|
||||||
|
## temperature
|
||||||
|
|
||||||
|
the definitive paper is van Oudenhove et al. (2011/2012), studying
|
||||||
|
Tapinoma nigerrimum and Aphaenogaster senilis.
|
||||||
|
|
||||||
|
key findings:
|
||||||
|
- above ~40C: workers cannot discriminate marked substrate — pheromone is
|
||||||
|
effectively destroyed
|
||||||
|
- above ~30C: foraging activity drops independently, partly because trails
|
||||||
|
decay too quickly to be useful
|
||||||
|
- between 25-40C: decay accelerates but trails remain functional
|
||||||
|
- the 40C threshold is a behavioral cliff, not a smooth curve
|
||||||
|
|
||||||
|
species differ in thermal resilience:
|
||||||
|
- T. nigerrimum (mass-recruiting): secretions highly volatile. most compounds
|
||||||
|
vanished even at 25C. only iridodials persisted up to 55C.
|
||||||
|
- A. senilis (group-recruiting): secretions less volatile, resisted elevated
|
||||||
|
temperatures better. at 55C, only nonadecene and nonadecane (long-chain
|
||||||
|
hydrocarbons) persisted.
|
||||||
|
|
||||||
|
pheromone persistence = f(temperature, time since deposition). both interact —
|
||||||
|
higher temperature accelerates decay at all time points.
|
||||||
|
|
||||||
|
diurnal implications: hot midday temperatures degrade trails laid in morning.
|
||||||
|
desert species tend to use less volatile compounds (evolutionary compensation
|
||||||
|
via chemistry rather than behavioral compensation via deposition rate).
|
||||||
|
|
||||||
|
|
||||||
|
## humidity and moisture
|
||||||
|
|
||||||
|
less quantitative data than temperature.
|
||||||
|
|
||||||
|
- higher humidity slows evaporation of polar pheromone components
|
||||||
|
- a cuticle covered with water may hinder both reception and emission of
|
||||||
|
pheromones — wet conditions impair laying AND sensing, not just persistence
|
||||||
|
- army ants (Eciton burchellii) increased speed by 30% in response to increased
|
||||||
|
humidity and rain sounds near the trail, but watering the trail directly did
|
||||||
|
not cause load-dropping
|
||||||
|
- extreme humidity (either direction) suppresses foraging entirely
|
||||||
|
|
||||||
|
wet porous substrates (damp soil, wet leaf litter) would absorb pheromone
|
||||||
|
faster than dry porous substrates, but no controlled study confirms this
|
||||||
|
quantitatively.
|
||||||
|
|
||||||
|
no direct evidence of ants selecting substrates specifically for pheromone
|
||||||
|
persistence, though trail-clearing behavior (see below) effectively creates
|
||||||
|
favorable substrate.
|
||||||
|
|
||||||
|
|
||||||
|
## physical trail infrastructure
|
||||||
|
|
||||||
|
### leaf-cutter ant highways (Atta spp.)
|
||||||
|
|
||||||
|
the standout example of ants modifying their environment for trail quality:
|
||||||
|
|
||||||
|
- colonies clear an average of 2,730 meters of trail per year
|
||||||
|
- individual trails can exceed 200 meters
|
||||||
|
- networks extend for kilometers cumulatively
|
||||||
|
- construction/maintenance costs: ~11,000 ant-hours per year
|
||||||
|
|
||||||
|
what they do: remove leaf litter, cut passes through overhanging vegetation,
|
||||||
|
shift soil to level surfaces. selective clearing — flat objects are ignored,
|
||||||
|
upright/folded obstructions are removed.
|
||||||
|
|
||||||
|
coordination: trail clearing happens WITHOUT information exchange between
|
||||||
|
workers. independent effort that adds up to emergent infrastructure. clearing
|
||||||
|
is triggered by freshly laid pheromone on an obstructed path.
|
||||||
|
|
||||||
|
### minim workers as trail maintainers
|
||||||
|
|
||||||
|
the smallest workers (minims) are always present on trails but never carry
|
||||||
|
leaves. they deposit pheromone at 83.3% frequency vs 20% for non-minims.
|
||||||
|
they're dedicated trail maintainers — keeping the chemical signal strong while
|
||||||
|
larger workers (2.2-2.9mm head width) handle physical clearing.
|
||||||
|
|
||||||
|
### physical + chemical reinforcement loop
|
||||||
|
|
||||||
|
physical clearing creates smooth packed soil (relatively non-porous) which
|
||||||
|
retains pheromone better than leaf litter. minim workers then maintain high
|
||||||
|
pheromone concentration. cleared trails retain pheromone better -> strong
|
||||||
|
pheromone attracts more traffic -> more traffic means more clearing and
|
||||||
|
reinforcement. positive feedback on two axes simultaneously.
|
||||||
|
|
||||||
|
energetics: not always profitable. depends on workforce composition and patrol
|
||||||
|
vs carry ratio. can amortize within days or take weeks/months.
|
||||||
|
|
||||||
|
|
||||||
|
## emergent highway formation
|
||||||
|
|
||||||
|
the trail network that emerges from substrate-dependent persistence:
|
||||||
|
|
||||||
|
1. substrate quality: non-porous > porous
|
||||||
|
2. temperature: shade > sun
|
||||||
|
3. physical modification: cleared > uncleared
|
||||||
|
4. traffic: popular > unpopular (reinforcement)
|
||||||
|
5. food quality: rich source > depleted source
|
||||||
|
|
||||||
|
a trail across cool, shaded, packed earth near a rich food source dominates
|
||||||
|
over a trail across hot, sun-exposed leaf litter near a marginal source. no
|
||||||
|
ant "decides" this — the pheromone math works out.
|
||||||
|
|
||||||
|
trail bifurcation: at branch points, trail asymmetry (angle, width) influences
|
||||||
|
decisions alongside pheromone presence. neither geometry nor pheromone alone
|
||||||
|
dominates — non-hierarchical interaction.
|
||||||
|
|
||||||
|
rapid decay as feature: in fire ants, trail pheromone drops below detection in
|
||||||
|
~2 minutes. this forces continuous reinforcement, meaning only actively
|
||||||
|
profitable routes persist. fast decay = responsive colony.
|
||||||
|
|
||||||
|
|
||||||
|
## simulation relevance
|
||||||
|
|
||||||
|
for the world texture's terrain type bits (3-5 in world.R):
|
||||||
|
|
||||||
|
terrain type decay multiplier real-world analog
|
||||||
|
0 (default) 1.0x generic surface
|
||||||
|
1 0.5x (slower) packed earth / rock
|
||||||
|
2 1.5x (faster) leaf litter / porous
|
||||||
|
3 2.0x (faster) sand / loose soil
|
||||||
|
4-7 reserved future use
|
||||||
|
|
||||||
|
the blur shader would read terrain type per cell and multiply the base decay
|
||||||
|
rate. ants wouldn't "know" about terrain — they'd just find that their trails
|
||||||
|
last longer on some surfaces, and positive feedback would do the rest.
|
||||||
|
|
||||||
|
temperature could be a global uniform rather than per-cell (simpler), or
|
||||||
|
per-cell if the simulation adds sun/shade regions.
|
||||||
|
|
||||||
|
|
||||||
|
## sources
|
||||||
|
|
||||||
|
Jeanson et al. 2003
|
||||||
|
Pheromone trail decay rates on different substrates in Pharaoh's ant
|
||||||
|
Physiological Entomology 10.1046/j.1365-3032.2003.00332.x
|
||||||
|
|
||||||
|
van Oudenhove et al. 2011
|
||||||
|
Temperature limits trail following through pheromone decay
|
||||||
|
Naturwissenschaften 10.1007/s00114-011-0852-6
|
||||||
|
|
||||||
|
van Oudenhove et al. 2012
|
||||||
|
Substrate temperature constrains recruitment and trail following
|
||||||
|
J Chem Ecol 10.1007/s10886-012-0130-x
|
||||||
|
|
||||||
|
Bruce et al. 2019
|
||||||
|
Infrastructure construction without information exchange in Atta
|
||||||
|
Proc R Soc B 10.1098/rspb.2018.2539
|
||||||
|
|
||||||
|
Bruce et al. 2017
|
||||||
|
Energetics of trail clearing in Atta
|
||||||
|
Behav Ecol Sociobiol 10.1007/s00265-016-2237-5
|
||||||
|
|
||||||
|
Robinson et al. 2008
|
||||||
|
Decay rates of attractive and repellent pheromones in foraging trail network
|
||||||
|
Insectes Sociaux 10.1007/s00040-008-0994-5
|
||||||
|
|
||||||
|
Morgan 2009
|
||||||
|
Trail pheromones of ants (review)
|
||||||
|
Physiological Entomology 10.1111/j.1365-3032.2008.00658.x
|
||||||
|
|
||||||
|
Effect of trail pheromones and weather on Eciton burchellii
|
||||||
|
ResearchGate 225346583
|
||||||
|
|
||||||
|
Minor workers maintain leafcutter ant pheromone trails
|
||||||
|
ResearchGate 248591651
|
||||||
|
|
||||||
|
Trail pheromone of Pachycondyla sennaarensis
|
||||||
|
PMC3281317
|
||||||
|
|
||||||
|
Monomorium trail pheromone longevity
|
||||||
|
ScienceDirect S1226861509001034
|
||||||
|
|
||||||
|
Uncovering the complexity of ant foraging trails
|
||||||
|
PMC3291321
|
||||||
|
|
||||||
|
Effect of trail bifurcation asymmetry and pheromone on trail choice
|
||||||
|
PMC4204274
|
||||||
Loading…
Reference in a new issue